CESSHIV-1 database

General information on HIV-1 isolate

# 1340

Accession number	AY452660
Name	PHD79B8
Subtype	C
Country	Ethiopia
Sampling year	1997
Patient	79

AY452660 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gccaaccctc agatgctgca tataagcagc tgcttttcgc ttgtactggg tctctctagg tagaccagat ctgagcctgg gagctctctg gtcttctggg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgt

Isolates with identical sequences of region:

AY452657(#1337) AY452661(#1341)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy