CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2092
Accession number AY851670
Name SP_LTNP14
SubtypeB
CountrySpain
Submitted to NCBI 2004
PatientLTNP14

AY851670 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggtgagccct cagatgctgc atataagcag ctgctctttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgcctcgagt gcttcaagta gtgt

Isolates with identical sequences of region:

AY851679(#2100)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy