CESSHIV-1 database

General information on HIV-1 isolate

# 3101

Accession number	DQ848388
Name	mc1
Subtype	B
Country	USA
Sampling year	1990
Patient	C-mother

DQ848388 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgtactgg gtctctctag ttagaccaga tctgagcctg ggagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gcctctagta gtgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy