CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3602
Accession number DQ848436
Name md12
SubtypeB
CountryUSA
Sampling year 1990
PatientD-mother

DQ848436 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgttctgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactgg ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848425(#3592) DQ848430(#3597) DQ848432(#3599) DQ848435(#2827) DQ848439(#3605) DQ848440(#3606) DQ848452(#3618)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy