CESSHIV-1 database

General information on HIV-1 isolate

# 3607

Accession number	DQ848441
Name	id1
Subtype	B
Country	USA
Sampling year	1990
Patient	D-child

DQ848441 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttttg cctgttctgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggttaactgg ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848444(#3610) DQ848450(#3616)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy