CESSHIV-1 database

General information on HIV-1 isolate

# 3689

Accession number	DQ848523
Name	ig20
Subtype	B
Country	USA
Sampling year	1990
Patient	G-child

DQ848523 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgatgc ataaaagcag ctgctctttg cctgtactgg gtctctctgg ttagaccaga tctgagcccg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttaagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ848514(#3680) DQ848515(#3681) DQ848516(#3682) DQ848518(#3684) DQ848521(#3687)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy