CESSHIV-1 database

General information on HIV-1 isolate

# 2223

Accession number	EF178612
Name	S_B253
Subtype	C
Country	India
Submitted to NCBI	2006

EF178612 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

ac-ggggagtg gtcaaccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tagaccagat ccgagcctgg gagctctctg gctatctagg gagcccactg cttaagcctc aataaagctt gccttgagtg ctctgagcag tgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy