CESSHIV-1 database

General information on HIV-1 isolate

# 1717

Accession number	EF370222
Name	02KJin12_2877
Subtype	B
Country	South Korea
Sampling year	2002
Patient	KJin

EF370222 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ctgctttttg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctagctag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370226(#2238) EF370273(#1740) EF370274(#1741) EF370275(#2249) EF370311(#1759) EF370370(#2944) EF370372(#1798) EU047670(#1868) EU047671(#2843) EU047672(#1869)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy