CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1771
Accession number EF370328
Name 05KMS2_2919
SubtypeB
CountrySouth Korea
Sampling year 2005
PatientKMS

EF370328 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc ataaaagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctgactag ggaacccact gcttaagcct caataaagct tgccttgagt gctttaagta gtgt

Isolates with identical sequences of region:

EF370327(#2259) EU047652(#1848)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy