CESSHIV-1 database

General information on HIV-1 isolate

# 3047

Accession number	FJ432057
Name	NII_PGI_IND_VT2
Subtype	C
Country	India
Sampling year	2008
Patient	VT2

FJ432057 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

ac-ggggagtg gtcaaccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tagaccagat ctgagcctgg gagctctctg gctatctagg gaacccactg cttaagcctc aataaagctt gccttgagtg ctctgagcag tgt

Isolates with identical sequences of region:

EU574917(#3024) FJ210864(#3000) FJ210866(#3043) FJ210867(#3044) FJ432056(#2966) FJ432061(#3051) FJ432063(#3053) FJ432064(#2967)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy