CESSHIV-1 database

General information on HIV-1 isolate

# 2460

Accession number	L28892
Name	4A1LTR
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	4

L28892 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagg ggctggggag tgacgagccc tcagatgctg catataagca gccgcttttt gcctgtactg ggtctctctg gttagaccag atctgagcct gggagctctc tggctaacta gggaacccac tgcttaagcc tcaataaagc ttgccttgag tgctttaagt agtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy