CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2507
Accession number U51287
Name 92UG037
SubtypeA1
CountryUganda
Sampling year 1992
PatientUG037

U51287 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

gttggggagt ggctaaccct cagatgctgc atataagcag ctgcttctcg cttgtactgg gtctctcttg gtagaccaga tc-gagcctgg gagctctctg gctagcgagg gaacccactg cttaagcctc aataaagctt gccgtgagtg cttcaagtag tgt

Isolates with identical sequences of region:

AB253429(#912)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy