CESSHIV-1 database

General information on HIV-1 isolate

# 3078

Accession number	U63539
Name	SM750, TYGE6S
Subtype	C
Country	Malawi
Sampling year	1989
Patient	750

U63539 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggg-agtg gtcaaccctc agatgctgca tataagcagc tgcttttcgc ctgtactggg tctctctagg tggaccagat ctgagcctgg gagctctctg gctatctagg gaacccactg cttaagcctc aataaagctt gccttgagcg cttcaagtag tgt

Isolates with identical sequences of region:

U63535(#3074)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy