CESSHIV-1 database

General information on HIV-1 isolate

# 3576

Accession number	AF102206
Name	IC5381
Subtype	G
Country	Cote d'Ivoire
Submitted to NCBI	1998
Patient	5381

AF102206 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tcgcgcctgt actgggtctc tcttgctaga ccagat-tgag cctgggagct ctctgactag cagaggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy