CESSHIV-1 database

General information on HIV-1 isolate

# 3586

Accession number	AF102218
Name	UG6401
Subtype	C
Country	Uganda
Submitted to NCBI	1998
Patient	UG6401

AF102218 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctgggtaga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

AF254679(#1469)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy