CESSHIV-1 database

General information on HIV-1 isolate

# 1498

Accession number	AF254710
Name	NT46_2
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	46

AF254710 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcttgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AF196731(#1299) AF254737(#1524) EU293450(#1210)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy