CESSHIV-1 database

General information on HIV-1 isolate

# 1544

Accession number	AM076844
Name	PG81_12
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG81

AM076844 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt acggtgtctc tctaggtaga ccagatctga gcccgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgctca aagtagtgt

Isolates with identical sequences of region:

AM076843(#1534) AM076845(#1545)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy