CESSHIV-1 database

General information on HIV-1 isolate

# 3184

Accession number	AY047308
Name	TV001C8_5
Subtype	C
Country	South Africa
Sampling year	1998
Patient	TV001

AY047308 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctcggtaga ccagatctga gcctgggagc cctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

AX455917(#1084) AY162223(#239) BD437615(#1090)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy