CESSHIV-1 database

General information on HIV-1 isolate

# 1331

Accession number	AY452651
Name	PHD74D3
Subtype	C
Country	Ethiopia
Sampling year	1997
Patient	74

AY452651 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttagcctgt actgggtctc tctaggtaga ccagatcaga gcctgggagc tctctggcta tct--ggaaccc actg-tta--cct caataaagct tgccttgagt gctctaagta gtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy