CESSHIV-1 database

General information on HIV-1 isolate

# 2210

Accession number	AY932742
Name	TZLM630
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	630

AY932742 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tcttgttaga ccagata-gag cctgggagct ctctggctag cgggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcctaa agcagtgt

Isolates with identical sequences of region:

AY932677(#2147)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy