CESSHIV-1 database

General information on HIV-1 isolate

# 2999

Accession number	DQ848360
Name	mb9
Subtype	B
Country	USA
Sampling year	1990
Patient	B-mother

DQ848360 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgaatctc tctggttaaa ccagatctaa gcctagaagc tctctggcta actagg-aacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy