CESSHIV-1 database

General information on HIV-1 isolate

# 3595

Accession number	DQ848428
Name	md4
Subtype	B
Country	USA
Sampling year	1990
Patient	D-mother

DQ848428 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt tctgggtctc tctggttaga ccagatctga gcctgggagc tctctggcta actggggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848431(#3598) DQ848433(#3600)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy