CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3670
Accession number DQ848504
Name ig1
SubtypeB
CountryUSA
Sampling year 1990
PatientG-child

DQ848504 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ctttgcctgt actgggtctc tctggttaga ccagatctga gcccgggagc tctctggcta actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagtgt

Isolates with identical sequences of region:

DQ848499(#3665) DQ848505(#3671) DQ848506(#3672) DQ848507(#3673) DQ848508(#3674) DQ848509(#3675) DQ848511(#3677)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy