CESSHIV-1 database

General information on HIV-1 isolate

# 3691

Accession number	DQ848525
Name	mh2
Subtype	B
Country	USA
Sampling year	1990
Patient	H-mother

DQ848525 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcacctgct ttttgcctgt actgggtctc tctagttaaa ccagatctga gcctgggagc tctctggctg gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttc aagtagcgt

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy