CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3016
Accession number EF178613
Name D24
SubtypeC
CountryIndia
Submitted to NCBI 2006

EF178613 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatccga gcccgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgctct gagcagtgt

Isolates with identical sequences of region:

EF469243(#973)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012