CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2248
Accession number EF370272
Name 00KMH11_2760L
SubtypeB
CountrySouth Korea
Sampling year 2000
PatientKMH

EF370272 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agc-gctgctt tttgcctgta ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy