CESSHIV-1 database

General information on HIV-1 isolate

# 1778

Accession number	EF370339
Name	06LSang8_2921
Subtype	B
Country	South Korea
Sampling year	2006
Patient	LSang

EF370339 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatcaga gcctgggagc tctctggcta gctagggaac ccactgctta agcctcaata aagcttgcct tgagtgctat aagtagtgt

Isolates with identical sequences of region:

EU047686(#1882)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy