CESSHIV-1 database

General information on HIV-1 isolate

# 2266

Accession number	EF380388
Name	120415
Subtype	G
Country	Spain (Cameroon)
Submitted to NCBI	2007

EF380388 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tttcgcctgt actgggtctc tcttgctaga ccagatttga gcctgggagc tctctggcta gtggaggaac ccactgctta agcctcaata aaagcttgcc ttgagtgctt caagtagtgt 

Isolates with identical sequences of region:

EF380385(#2264) EF380386(#2265) EF380391(#2268)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy