CESSHIV-1 database

General information on HIV-1 isolate

# 1849

Accession number	EU047653
Name	00HJY3_3328
Subtype	B Korean
Country	South Korea
Sampling year	2000
Patient	HJY

EU047653 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct ttctgcctgt actgggtctc tctggttaga ccagatctga gcctgggagc tctctggctg actagggaac ccactgctta agcctcaata aagcttgcct tgagtgcttt aagtagtgt

Isolates with identical sequences of region:

AB287364(#930) AB287365(#931) EF125628(#3457) EF125629(#3458) EF125630(#3459) EF370251(#2242) EF370327(#2259) EF370328(#1771) EU047638(#2271) EU047652(#1848)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy