CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3479
Accession number FB675252
Name YBF30_patent
SubtypeGroup N
CountryFrance
Submitted to NCBI 1998
Patient30
CommentsPatent

FB675252 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcttgt actgggtctc tcttgctgga ctatacagat tagagcctgg gagctctctg gctagc-aggg aacccactgc ttaagcctca ataaatacag cttgccttga gtgcta-aagt ggtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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Institute of Molecular Biology and Genetics 2008-2012