CESSHIV-1 database

General information on HIV-1 isolate

# 3875

Accession number	HM583635
Name	Vin60
Subtype	A1
Country	Ukraine
Sampling year	2009

HM583635 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tcttgttaga ccagatc-gag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgt

Isolates with identical sequences of region:

AF413988(#1353) AF413989(#1354) AF414006(#286)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy