CESSHIV-1 database

General information on HIV-1 isolate

# 2512

Accession number	U51292
Name	93mw959
Subtype	C
Country	Malawi
Sampling year	1993
Patient	959

U51292 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtaga ccagatctga gcctgggagc tctctggcta tctggggaac ccactgctta agcctcaata aagcttgcct tgagtgctct aagtagtgt

Isolates with identical sequences of region:

AB191645(#1171) AF096640(#1921) AF096651(#1932) AF405198(#1981)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy