CESSHIV-1 database

General information on HIV-1 isolate

# 3074

Accession number	U63535
Name	SM750, TYGE6L
Subtype	C
Country	Malawi
Sampling year	1989
Patient	750

U63535 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagctgct tttcgcctgt actgggtctc tctaggtgga ccagatctga gcctgggagc tctctggcta tctagggaac ccactgctta agcctcaata aagcttgcct tgagcgcttc aagtagtgt

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy