CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2519
Accession number U67768
Name TW356
SubtypeU
CountryTaiwan
Submitted to NCBI 1996

U67768 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE, TAR, polyA

The primary sequence:

agcagccgct tctcgcctgt actgggtctc tcttgttaga ccagata-gag cctgggagct ctctgactag caagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctaca agtagtgt

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy