CESSHIV-1 database

General information on HIV-1 isolate

# 734

Accession number	AB231893
Name	GHNJ175
Subtype	G
Country	Ghana
Sampling year	2003
Patient	175

AB231893 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaatcctttt gactagcgg---c t-gaaagagag a

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy