Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 734
Accession number AB231893
Name GHNJ175
Sampling year 2003

AB231893 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gaagctgcat ataagcagcc gcttctcgct tgtactgggt ctcttctgct agaccagatc tgagcctggg agctctctgg ctagtagagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccac tctagacagt gta-aaaatct ctagca

Isolates with identical sequences of region:

AB287003(#921) AB287004(#922)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy