CESSHIV-1 database

General information on HIV-1 isolate

# 904

Accession number	AB253421
Name	p92RW008A04
Subtype	A1
Country	Rwanda
Sampling year	1992
Patient	RW008

AB253421 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc att--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB253422(#905) AB253429(#912) AY322193(#380) EU110096(#1041) FJ864679(#1427) U51190(#41)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy