CESSHIV-1 database

General information on HIV-1 isolate

# 380

Accession number	AY322193
Name	ML752-3- 1997
Subtype	A1
Country	Kenya
Sampling year	1997
Patient	ML752

AY322193 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc att--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB253421(#904) AB253422(#905) AB253429(#912) EU110096(#1041) FJ864679(#1427) U51190(#41)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy