CESSHIV-1 database

General information on HIV-1 isolate

# 913

Accession number	AB253430
Name	pJPDR0769BF3
Subtype	BF1
Country	Japan
Submitted to NCBI	2006
Patient	769

AB253430 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc catt--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB253431(#848) DQ358808(#748) DQ990880(#977)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy