CESSHIV-1 database

General information on HIV-1 isolate

# 977

Accession number	DQ990880
Name	05CNHB_hp3
Subtype	B'
Country	China
Sampling year	2005
Patient	hp3

DQ990880 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc catt--ttttga ctagcggagg ctagaaggag aga

Isolates with identical sequences of region:

AB253430(#913) AB253431(#848) DQ358808(#748)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy