CESSHIV-1 database

General information on HIV-1 isolate

# 952

Accession number	AB286862
Name	p03GH189AG15
Subtype	CRF02_AG
Country	Ghana
Sampling year	2003
Patient	189

AB286862 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaggt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB231894(#735) AB231897(#738) AB286861(#951) FJ614983(#2399) FJ614985(#2401) FJ614986(#3356)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy