CESSHIV-1 database

General information on HIV-1 isolate

# 3356

Accession number	FJ614986
Name	05KSN5_4232
Subtype	CRF02_AG
Country	South Korea (Gabon)
Sampling year	2005
Patient	KSN

FJ614986 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggactcggc ttgctgaggt gcacacagca agaggcgaga g-cggcgactg gtgagtacgc caa---ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AB231894(#735) AB231897(#738) AB286861(#951) AB286862(#952) FJ614983(#2399) FJ614985(#2401)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy