CESSHIV-1 database

General information on HIV-1 isolate

# 2743

Accession number	AB485640
Name	US2
Subtype	B
Country	USA
Sampling year	1991
Patient	US2

AB485640 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaaatttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AB485638(#2741) AB485639(#2742) AY173953(#246) HM586210(#3336) HM586211(#3337) HM586212(#3338)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy