CESSHIV-1 database

General information on HIV-1 isolate

# 48

Accession number	AF042106
Name	PC18RO1
Subtype	B
Country	Australia
Sampling year	1993
Patient	C18

AF042106 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF042102(#44) EF370332(#1775) U37270(#2500)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy