CESSHIV-1 database

General information on HIV-1 isolate

# 48

Accession number	AF042106
Name	PC18RO1
Subtype	B
Country	Australia
Sampling year	1993
Patient	C18

AF042106 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE region

The primary sequence:

actggggagt ggcgagccct cagatgctgc atataagcag ctgctttctg cctgtactgg gtctctctgg ttagaccaga tctgagcctg ggagctctct ggctaactag ggaacccact gcttaagcct caataaagct tgccttgagt gcttcaagta gtgt

Isolates with identical sequences of region:

DQ287306(#3001) DQ287310(#2993) EF370172(#2226) EF370173(#2227) EF370176(#1451) EF370180(#1454) EF370211(#2233) EF370294(#2256) EU047600(#2270) EU047603(#1623) EU047606(#1600) EU047693(#1888) U37267(#3072)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy