CESSHIV-1 database

General information on HIV-1 isolate

# 40

Accession number	AF049337
Name	94CY032-3
Subtype	CRF04_cpx
Country	Cyprus (Greece)
Sampling year	1994
Patient	HO32

AF049337 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AF119820(#61) AY586548(#676)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy