CESSHIV-1 database

General information on HIV-1 isolate

# 61

Accession number	AF119820
Name	GR11_97PVCH
Subtype	CRF04_cpx
Country	Greece
Sampling year	1991
Patient	GR11

AF119820 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AF049337(#40) AY586548(#676)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy