CESSHIV-1 database

General information on HIV-1 isolate

# 59

Accession number	AF084936
Name	DRCBL
Subtype	G
Country	Belgium (DRC)
Sampling year	1996
Patient	BL

AF084936 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaaatttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY586540(#452) FJ389363(#1904)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy