CESSHIV-1 database

General information on HIV-1 isolate

# 196

Accession number	AF443098
Name	00BW1811.3
Subtype	C
Country	Botswana
Sampling year	2000
Patient	18113

AF443098 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ093599(#503) DQ369989(#655)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy