CESSHIV-1 database

General information on HIV-1 isolate

# 503

Accession number	DQ093599
Name	04ZAPS205B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	205B1

DQ093599 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF443098(#196) DQ369989(#655)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy